John F. Alcorn, PhD
- Professor, Department of Pediatrics
- Professor, Department of Immunology
- Vice Chair of Basic Research

Education & Training
- PhD in Cell and Molecular Biology, Duke University, 2003
- MS in Physiology, Youngstown State University, 1998
- BS in Biology, Youngstown State University, 1996
- Postdoc: University of Vermont, 2004-2007
Research Interest Summary
Research Interests
The Alcorn laboratory is focused on pulmonary immunity, host defense, epithelial cell biology, and lung physiology as it relates to pediatric disease. A primary laboratory focus is on influenza infection and host defense mechanisms in the lung. Influenza presents a global health challenge for which there are limited therapeutics options. The laboratory is interested in understanding key factors involved in influenza pathogenesis and host mediated immunopathology. Recent studies in the lab are focused on how preceding influenza infection suppresses the ability of the lung to respond to secondary bacterial infections. We have shown that influenza inhibits Type 17 immune activation upon secondary challenge with MRSA resulting in attenuated clearance. These data identified a novel immune mechanism involved in increased susceptibility following viral infection. Over the last 15 years, the laboratory has extended its focus to fully elucidate immune dysfunction during influenza and influenza, bacterial super-infection. The Alcorn laboratory is also working on human immune responses to influenza vaccination and infection. These studies conducted in partnership with the CDC are focused on cell mediated immunity. The current laboratory focus combines mouse models of human lung disease with translational studies utilizing the significant access to samples here at UPMC Children’s Hospital of Pittsburgh. The group’s goal is to model human disease, as best as possible, and elucidate novel mechanisms of disease pathogenesis in order to inform therapeutic design.
Publications
1. Miller LM, Duray AM, Cipolla EM, Rago F, Dresden BP, Parenteau KL, Gupta A, Alcorn JF. B cell deficiency induces cytotoxic memory CD8+ T cells during influenza-associated bacterial pneumonia. J Clin Invest. 2025 Jun 10;135(16):e188342. doi: 10.1172/JCI188342. eCollection 2025 Aug 15. PMC12352901
2. Duray AM, Miller LM, Dresden BP, Rago F, Antos D, McHugh KJ, Alcorn JF. Nrf2 regulates inflammation by modulating dendritic cell – T cell crosstalk during viral-bacterial super-infection. J Immunol 2024 Dec 15;213(12):1834-1843. PMC11611625
3. Antos D, Parks OB, Duray AM, Abraham N, Michel JJ, Kupul S, Westcott R, Alcorn JF. Cell-intrinsic regulation of phagocyte function by interferon lambda during pulmonary viral, bacterial super-infection. PLoS Pathog. 2024 Aug 23;20(8):e1012498. doi: 10.1371/journal.ppat.1012498. PMC11376568
4. Huckestein BR, Zeng K, Westcott R, Alder JK, Antos D, Kolls JK, Alcorn JF. Mammalian Target of Rapamycin Complex 1 Activation in Macrophages Contributes to Persistent Lung Inflammation following Respiratory Tract Viral Infection. Am J Pathol. 2024 Mar;194(3):384-401. PMC10913760
5. Martin JM, Moehling Geffel K, Ortiz MA, Rajasundaram D, Nowalk MP, Zimmerman RK, Alcorn JF. Differential Induction of Interferon Stimulated Genes by Cell-based Versus Egg-based Quadrivalent Influenza Vaccines in Children During the 2018-19 Season. J Infect Dis. 2024 May 15;229(5):1393-1401. PMC11491834